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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
SPL01_0104_H12
Library: SPL01 (Spleen)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 2,076)
[FASTA format sequence]
TAGAAGGCAG TGGCTGCAGG TGGCTGTCGG TTTAAGCAGT TGCGTGCGCT CTCTCTCTCT
CTCTCTCTTC TGGGACTCTC GGGAGCTGCG GCTCCGGCGC CAGGTGGCAA GACGCGGGTC
TCGGAGACGC CAGCCTCCGT GCATCCCACT GTGGTTCGGG GGTGGTGGTT TTTAAGTACG
GAAGGGCCCT TGGTTCCACC GGAGGAATCT GCCGTGGGTC CCCGAGTTCC TGGAGCTGTC
TTCCGTATAC CTGAGTCAGA CCAGAGCACA GTCCGAAGGG CGGGCAGGAG GGCTCATCTG
TGTACTGTGT GCAGTAAAAC ATTCCAACCA TCTGTCAGGA AAGTGTTCCC ACTATGGATT
TCAAGTCTGT CTCAAAGCAG CAGTCCAGGA CCAGGACCTC TTCTAGGGAG GAGCGAGTGC
CTGATCAGAA TGGCTGTGGG ATGGTTTTAC CTGTCGGCCC TGGCGCTGTT CTCCCTGGGC
TCCATGTGCA TCCTCTCCAC CATCTATTGG ATGCGGTACT GGCACGAAGG CTTTGCCTGA
GATGGCACCA TACTCACGTT CAACTGGCAC CCGGTGCTCA TGGTGACTGG CATGGTGGTG
CTCTACAGTG CTGCGTCACT GGCGTACCGC CTGCCCCAGT CATGGGTAGG GCCCAAGCTG
CCCTGGAAGT TGGGCCACGC AGCCATGCAC CTGATGGCCT TCATCCTGAC TGTGCTGGGG
CTGGCGGCCG TCTTTAACTC TCACAACCAC GAGAAGATCC CCAACCTCTA CTCCCTGCAC
AGCTGGCTGG GCATCACCAC CGTCTTCCTC TTCGCCTGCC AGTGGTTCTT GGGCTTTGTG
GTCTTTCTGC TGCCCTGGGC GTCTGTGCGG CTGCGCAGCC TCCTTAAACC CATCCACGTC
TTCTTTGGAG CCTCCATTCT CTCTCTGGCC ATTGCGTCTG TCATTTCCGG CATCAATGAG
AAGCTCTTCT TCAGTTTGAA AAATGGCACC ACTTCATACT CCAACCTGCC CGATGAGGCC
GTCTTCGCGA ACAGTGCGGG GATGCTGGTG GTGGTCTTTG GGCTGCTGGT GCTCTATATC
TTACAGGCCT CGTCTTGGAA ACGCCCAGAG CCAGGGCTCC AGGCCGAAAG ACAGGTCAGG
CCGCCCGCCC TGGGTTGCGC TTCTTCTGCT CTGGTCTCCA TCCAGCCCCT CCGGACGTGA
GGCGGGGCGG ACACGCACGC GGTGGAGGGA GAGGGGCCAA GGGCAGAGCT GCTCCGCAGA
GAAGCTGAGG GCCCCCTGCT CCCGCTGCCT CGTGTCTACA CACGTGCCCT TCTTGCTGCT
GCTACAGCCG GGGCCTGGAT CCTGGCCTTT CCCTGTGACT GACACGCCCA TCACCATCGG
ACAGCTCTCT AAACCCTGGT GGCCCTGTGT CCGAACCCTG GAAGCAGCCT TTCCCTTCCC
TCGCCTCTTC AGGCCCGGGC ACCTTCAACC TTGCTGTCTC GGCAGGGCCC TTGGCCAGCT
GTTGTCACGT GCCAGCTCAC CATGAAACGT GCCGAAGATG TGGTGTGTCG TGCCCAGCAG
AGCCCTGGGA GCACGGCCGC TTCTGGAGGC TTCCTTGCTG AGTGTCAAAG TGCCTCACGT
GCCCGTACAG CAGCCACCCG CCTGGCAAAC CCAGTCTCAG GTGTAATGCT GCAGCGTGTG
CCCTTGCTCT TTTCCCGACG AGACCGGGGT GGCGGGTCTT GCTTCTGTGT TGGCATCGCG
GCTTTTCCTG CTCTCTGCAA ACCAGTGCTG CCAGGCCCTG GGCTCAGTAC TGTTGTGCTT
AGGTGACAAG CAGCACAACA CCAGGGGCCC CAAGTGGGCT TACTGCTTGG CAGGTGGCCA
CAAAGCTGGC CGTCCACCCT GCCCCATGTG GCCAGATGCT GGCGGGAGGC TACGGTGGAA
CTTCCTGATC CACTGGAATG ACTGCCAGGC ACTTTGGTCC CAGGACCACC TACACCCCTT
TCCACGTGGG TAGGCGTTTC ACTTACGAAG CTGGATTTTC ATTAAATGTG TTTTTTAAGA
ATCAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAA
Deduced amino acid sequence: (length: 206) [FASTA format sequence]
MVTGMVVLYS AASLAYRLPQ SWVGPKLPWK LGHAAMHLMA FILTVLGLAA VFNSHNHEKI
PNLYSLHSWL GITTVFLFAC QWFLGFVVFL LPWASVRLRS LLKPIHVFFG ASILSLAIAS
VISGINEKLF FSLKNGTTSY SNLPDEAVFA NSAGMLVVVF GLLVLYILQA SSWKRPEPGL
QAERQVRPPA LGCASSALVS IQPLRT
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CYBASC3 | cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo sapiens]. | 339 | 5e-93 | |
|
| CYBRD1 | cytochrome b reductase 1 isoform 1 [Homo sapiens]. | 170 | 4e-42 | |
|
| CYB561 | cytochrome b561 [Homo sapiens]. | 124 | 3e-28 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Cybasc3 | cytochrome b ascorbate-dependent protein 3 [Mus musculus]. | 326 | 5e-89 | |
|
| Cybrd1 | cytochrome b reductase 1 [Mus musculus]. | 170 | 5e-42 | |
|
| Cyb561 | cytochrome b561 [Mus musculus]. | 128 | 2e-29 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC483799 | PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein [Canis familiaris]. | 330 | 3e-90 | |
|
| LOC478796 | PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris]. | 176 | 1e-43 | |
|
| LOC610631 | PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis familiaris]. | 128 | 2e-29 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CYBASC3 | cytochrome b ascorbate-dependent protein 3 [Bos taurus]. | 374 | e-103 | |
|
| CYBRD1 | cytochrome b reductase 1 [Bos taurus]. | 188 | 1e-47 | |
|
| CYB561 | cytochrome b561 [Bos taurus]. | 132 | 2e-30 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100519643 | PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2 [Sus scrofa]. | 419 | e-117 | |
|
| CYBRD1 | cytochrome b reductase 1 [Sus scrofa]. | 182 | 5e-46 | |
|
| CYB561 | cytochrome b561 [Sus scrofa]. | 132 | 1e-30 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-05463 | 4.1 | TTCCACGTGGGTAGGCGTTTCACTTACGAAGCTGGATTTTCATTAAATGTGTTTTTTAAG |
Assembly member: TOP