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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
TCH01_0052_H06
Library: TCH01 (Trachea)
Individual: LWD3, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,096)
[FASTA format sequence]
AAAAAAAACT CCCTCCTCCA GCTTGTCCTC CGGTCGCGTT GCCACCACAG CGGCCGCTGC
CGGGCGCGGT TACGGCGGGT CGGTTGGTGT GTCTTTCAGC GTCGATTTCT GTGCAGTTGA
ACGCCTGCCA TGGCTGATTT AGATCCGTTC GGCGCCCCCG CCGGCCCCTC GCTGGGGAAC
GGAGTGGCCG GCGAGGAGGA CCCGGCCGCG GCCTTCTTGG CGCAGCAGGA GAGCGAGATT
GCTGGCATCG AGAACGACGA GGCCTTCGCC ATCCTGGACG GAGGCGCTCC TGGGCCCCAG
CCGCACGGCG AGCCGCCGGG GGGTCCGGAT GCCGTTGATG GAGTGATGAA TGGCGAATAC
TACCAGGAGA GTAATGGGCC GACAGACAGT TATGCAGCTA TTTCACAAGT GGATCGATTG
CAGTCAGAGC CTGAAAGTAT CCGTAAATGG AGAGAAGAGC AAACGGAACG CTTGGAAGCC
CTTGATGCCA ATTCTCGGAA GCAGGAAGCA GAGTGGAAAG AAAAAGCAAT GAAGGAGCTG
GAAGAGTGGT ATGCAAGGCA GGACGAGCAG TTACAAAAGA CGAAAGCAAA CAACAGGGCA
GCAGAAGAAG CCTTTGTAAA TGACATTGAA GAGTCGTCCC CAGGCACGGA GTGGGAACGG
GTGGCCCGGC TGTGTGACTT TAACCCCAAG TCCAGCAAGC AGGCCAAAGA TGTCTCCCGC
ATGCGTTCTG TCCTCATCTC CCTCAAGCAG GCCCCCCTGG TGCACTGAAG AGCCACCATG
TGGAAACACT ACATCTGCAA TATCTTAATC CTACTCAGTG AAGCTCTTCA CAGTAATTGG
ATTAATTATG TTGAGTTCTT TTGGACCAAA CCTTTTTGTC TTTAGAGTTG ATCATTGTTT
GTGATTGCAT GTTTCCTTCA ACTGTGTTCT CCCTGGCATT CAGAGAGGAG CGGAGGCGCC
CAGGGAAGGG AGGGAGGCCT CCCAAGGGCA GCCTCAACCT CTGCTTTTGT GCATTATTCT
GAGAATAAAT TTCTGTTTAA AACTAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAA
Deduced amino acid sequence: (length: 212) [FASTA format sequence]
MADLDPFGAP AGPSLGNGVA GEEDPAAAFL AQQESEIAGI ENDEAFAILD GGAPGPQPHG
EPPGGPDAVD GVMNGEYYQE SNGPTDSYAA ISQVDRLQSE PESIRKWREE QTERLEALDA
NSRKQEAEWK EKAMKELEEW YARQDEQLQK TKANNRAAEE AFVNDIEESS PGTEWERVAR
LCDFNPKSSK QAKDVSRMRS VLISLKQAPL VH
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CLTA | clathrin light chain A isoform a [Homo sapiens]. | 367 | e-101 | O |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Clta | clathrin light chain A isoform a [Mus musculus]. | 368 | e-102 | O |
|
| Cltb | clathrin light chain B [Mus musculus]. | 238 | 6e-63 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC474765 | PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3 [Canis familiaris]. | 369 | e-102 | O |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CLTA | clathrin light chain A [Bos taurus]. | 354 | 7e-98 | O |
|
| CLTB | clathrin light chain B [Bos taurus]. | 246 | 3e-65 | O |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CLTA | PREDICTED: clathrin light chain A isoform 1 [Sus scrofa]. | 384 | e-107 | |
|
| LOC100525860 | PREDICTED: clathrin light chain B-like isoform 2 [Sus scrofa]. | 239 | 2e-63 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-18430 | 4.1 | AGGCCTCCCAAGGGCAGCCTCAACCTCTGCTTTTGTGCATTATTCTGAGAATAAATTTCT |
Assembly member: TOP