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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
THY01_0039_B08
Library: THY01 (Thymus)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,257)
[FASTA format sequence]
TCTCCAGAGA CAACTCCCAG AACACGGCCT ATGTGCAAAT GAATAGCCTG AGAACCGAAG
ACACGGCCCG CTATTACTGT GCAGGACGCG ACTTAGGGTG GGGCCCAGGC GTTGAAGTCG
TCGTGTCCTC AGCCCCCAAG ACGGCCCCAT CGGTCTACCC TCTGGCCCCC TGCGGCAGGG
ACGTGTCTGG CCCTAACGTG GCCTTGGGCT GCCTGGCCTC AAGCTACTTC CCCGAGCCAG
TGACCGTGAC CTGGAACTCG GGCGCCCTGA CCAGTGGCGT GCACACCTTC CCATCCGTCC
TGCAGCCGTC AGGGCTCTAC TCCCTCAGCA GCATGGTGAC CGTGCCGGCC AGCAGCCTGT
CCAGCAAGAG CTACACCTGC AATGTCAACC ACCCGGCCAC CACCACCAAG GTGGACAAGC
GTGTTGGAAT ACACCAGCCG CAAACATGTC CCATATGCCC AGGCTGTGAA GTGGCCGGGC
CCTCGGTCTT CATCTTCCCT CCAAAACCCA AGGACACCCT CATGATCTCC CAGACCCCCG
AGGTCACGTG CGTGGTGGTG GACGTCAGCA AGGAGCACGC CGAGGTCCAG TTCTCCTGGT
ACGTGGACGG CGTAGAGGTG CACACGGCCG AGACGAGACC AAAGGAGGAG CAGTTCAACA
GCACCTACCG TGTGGTCAGC GTCCTGCCCA TCCAGCACCA GGACTGGCTG AAGGGGAAGG
AGTTCAAGTG CAAGGTCAAC AACGTAGACC TCCCAGCCCC CATCACGAGG ACCATCTCCA
AGGCTATAGG GCAGAGCCGG GAGCCGCAGG TGTACACCCT GCCCCCACCC GCCGAGGAGC
TGTCCAGGAG CAAAGTCACG CTAACCTGCC TGGTCATTGG CTTCTACCCA CCTGACATCC
ATGTTGAGTG GAAGAGCAAC GGACAGCCGG AGCCAGAGAA CACATACCGC ACCACCCCGC
CCCAGCAGGA CGTGGACGGG ACCTTCTTCC TGTACAGCAA ACTCGCGGTG GACAAGGCAA
GATGGGACCA TGGAGACAAA TTTGAGTGTG CGGTGATGCA CGAGGCTCTG CACAACCACT
ACACCCAGAA GTCCATCTCC AAGACTCAGG GTAAATGAGC CACCCGCTGC ACCCCACGTG
CTCTCGGGTC CCGCGAGCTC GCCTGAGCCC CAGCGCTGTG TACATACGTC CCGGGCCAGC
ATGAAATAAA GCACCCAACG CCCTCTGGCA CCCGCAAAAA AAAAAAAAAA AAAAAAA
Deduced amino acid sequence: (length: 359) [FASTA format sequence]
MNSLRTEDTA RYYCAGRDLG WGPGVEVVVS SAPKTAPSVY PLAPCGRDVS GPNVALGCLA
SSYFPEPVTV TWNSGALTSG VHTFPSVLQP SGLYSLSSMV TVPASSLSSK SYTCNVNHPA
TTTKVDKRVG IHQPQTCPIC PGCEVAGPSV FIFPPKPKDT LMISQTPEVT CVVVDVSKEH
AEVQFSWYVD GVEVHTAETR PKEEQFNSTY RVVSVLPIQH QDWLKGKEFK CKVNNVDLPA
PITRTISKAI GQSREPQVYT LPPPAEELSR SKVTLTCLVI GFYPPDIHVE WKSNGQPEPE
NTYRTTPPQQ DVDGTFFLYS KLAVDKARWD HGDKFECAVM HEALHNHYTQ KSISKTQGK
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | IGLL1 | immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo sapiens]. | 63.9 | 3e-10 | |
|
| IGLL5 | immunoglobulin lambda-like polypeptide 5 [Homo sapiens]. | 63.5 | 4e-10 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Igh-VJ558 | PREDICTED: hypothetical protein LOC16061 [Mus musculus]. | 148 | 1e-35 | |
|
| Igll1 | immunoglobulin lambda-like polypeptide 1 [Mus musculus]. | 57.8 | 2e-08 | |
|
| Sirpa | tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1 [Mus musculus]. | 54.7 | 2e-07 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC486411 | PREDICTED: similar to immunoglobulin iota chain preproprotein isoform 18 [Canis familiaris]. | 87.8 | 2e-17 | O |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC524810 | hypothetical protein LOC524810 [Bos taurus]. | 215 | 6e-56 | |
|
| IGLL1 | immunoglobulin lambda-like polypeptide 1 [Bos taurus]. | 83.2 | 4e-16 | |
|
| LOC616727 | PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos taurus]. | 74.7 | 2e-13 | |
|
| LOC100141470 | PREDICTED: IGK protein-like [Bos taurus]. | 70.1 | 4e-12 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC396781 | IgG heavy chain [Sus scrofa]. | 723 | 0.0 | O |
|
| LOC100152327 | immunoglobulin lambda-like polypeptide 5 [Sus scrofa]. | 79 | 5e-15 | |
|
| LOC100621525 | PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus scrofa]. | 78.2 | 9e-15 | |
|
| LOC100523213 | PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus scrofa]. | 66.2 | 4e-11 | |
|
| LOC100621559 | PREDICTED: t-cell receptor beta chain T17T-22-like [Sus scrofa]. | 52.4 | 5e-07 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-10138 | 4.1 | AGACAAATTTGAGTGTGCGGTGATGCACGAGGCTCTGCACAACCACTACACCCAGAAGTC |
Assembly member: TOP