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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
THY01_0126_D09
Library: THY01 (Thymus)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 2,119)
[FASTA format sequence]
TGGCGCGCTG TGCGGCGCAG GGCGGCTGGC ACAAACGGCG GCGCCGGGGC CGGAGGAAAA
AGCTGGCCAT CGTGACAGTT CTCTTCCCAA GCCCCTAGGG ACATCAGAGG ATTTGGGGAC
CAGCGAGCAC CCCCAGGGCA CGAGAAAAGT TTCTGTCACC TGCCCTGCCT CATCCTGCCC
CACGCCAGGC CCAGCTGCCC TGGCCCCCGG CTGCATCAAG TGGAGGAGGA GGAGGTGGAG
GAGGGTGGCA CCATGGGCCT GGGCCGTGCC CTCCATGCCC GGGGGATGAA GACACTGCTG
CCATGGACAG CCCGTGCCAG CCGCAGCCCC TGAGTCAGGC TCTCCCTCAG TTGCCTGGTT
CCGTGTCAGA ACCGTTGGAG CCTAACCGGG CCAGGATGGG GGTGGAGAGT TACCTGCCCT
GTCCCCTGCT GTCCTCCTAC CACTGTCCAG GAGCGCCTGG TGAGGCCTCG GCGGGAAGTG
GGACCCCCAG AGCCACAGCT ACTTCCACCA CAGCCAGCCC CCTGCGGGAG GGCTTCGGTG
GGCAGGATGG CGGCGAGCTG CGGCCGCTGC AGAGTGAGGG TGCTGCGGCA CTGGTCACCA
AGGGGTGCCA GCGGCTGGCA GCCCAGGGCG CCCGGCCCGA GGCCCCCAAA CGGAAATGGG
CAGAGGGTGG TGGGGATGCC CCCGCACCCA GCAAACGGCC CTGGGCCAGG CAGGAGAACC
AGGAGGCTGA GGCCGAGGGG GAGGGCTGCA GCAGTGGCAG TGGTGAGCCC AGTGCTGGGC
TGAGGGAGGA GGTGCTGCCC GCTGCACCGG AGCGCCTGGC CCTGGACTAT ATTGTGCCCT
GCATGCGGTA CTATGGCATC TGCGTCAAGG ACAGTTTCCT GGGGGCGGCA CTAGGTGGCC
GTGTGCTGGC CGAGGTGGAG GCCCTGAAGC GGGGCGGGCG CCTGCGTGAC GGGCAGCTAG
TGAGCCAGCG GGCTATCCCG CCACGCAGCA TCCGTGGGGA CCAGATTGCC TGGGTGGAAG
GCCATGAGCC CGGCTGCCGA AGCATTGGTG CCCTTATGGC CCACGTGGAT GCTGTAATCC
GCCACTGTGC TGGGAGGCTG GGCAGCTACG TCATCAACGG GCGCACCAAG GCCATGGTGG
CATGTTACCC AGGCAACGGG CTGGGGTACG TGAGACACGT TGACAATCCC CACGGCGATG
GGCGCTGCAT CACCTGTATC TATTACCTGA ATCAGAACTG GGACGTCAAG GTGCATGGCG
GCCTGCTGCA GATATTCCCA GAGGGCCGGC CTGTGGTAGC CAACATCGAG CCACTCTTTG
ACCGGCTGCT CATTTTCTGG TCTGATCAGC GGAACCCCCA TGAGGTGAAA CCAGCCTATG
CCACCAGGTA TGCCATCACT GTCTGGTATT TTGACGCCAA GGAGAGAGCA GCAGCCAAAG
ACAAGTATCA GCTAGCAGGA CAGAAAGGTG TCCAAGTACC AGTATCGCAG CCAACTACGC
CCACCTAGTG GCCAGCCCCA GAGCTGCATG GACAGCCGGC TTGCCCTGAC TTCAGAGAGC
CCTGGGCCCT GGTGCTGCCA GGCCAGCAGC CCACCAGTCT CAGTGCCTGC TCCTTCCCCG
CCACCGCCTC TGCTTCTGAC TTTGCCTCTG TCCTGCCTGG TGTGGAGGGC TCCGTCCAAC
GCTGAGGACC AAGGAGGAGG AGAGACCTCT CCTGCCCTGG GATGGGGACT GGGGTTGTGA
CCCGGGCAGA GGCCAGTGCT GGGGGCTGCC GTTACTGGAG CTGGGCCCCT GTGTCCTGCC
CTGTTTGGTC ATTCCCCCTC TCAGGTTTGG AGAGCTGGAA GGAGGCACTG CCACCTCCCA
CCAGGATGCA GGATTTGAGG TTGGGGTGAG TCATGGCCTC TTGCTGGCAA AGGTTTATGG
GGGGAGTATC CCCAAGCCCC CTACTCCTCC AGCCTGGAAT GTGAAGTGAC TCCCCAACCC
CTTTGGCCAT GGCACCTTTT GGACTAGGCT GCCACTGCTT GGGCAGGATG AAAGGTGCTG
GGAGGAGCAT GGGCGTGAAA GTTGTCAGCC AAGAAATAAA AGTTTACCTC AGCTGCAAAA
AAAAAAAAAA AAAAAAAAA
Deduced amino acid sequence: (length: 401) [FASTA format sequence]
MDSPCQPQPL SQALPQLPGS VSEPLEPNRA RMGVESYLPC PLLSSYHCPG APGEASAGSG
TPRATATSTT ASPLREGFGG QDGGELRPLQ SEGAAALVTK GCQRLAAQGA RPEAPKRKWA
EGGGDAPAPS KRPWARQENQ EAEAEGEGCS SGSGEPSAGL REEVLPAAPE RLALDYIVPC
MRYYGICVKD SFLGAALGGR VLAEVEALKR GGRLRDGQLV SQRAIPPRSI RGDQIAWVEG
HEPGCRSIGA LMAHVDAVIR HCAGRLGSYV INGRTKAMVA CYPGNGLGYV RHVDNPHGDG
RCITCIYYLN QNWDVKVHGG LLQIFPEGRP VVANIEPLFD RLLIFWSDQR NPHEVKPAYA
TRYAITVWYF DAKERAAAKD KYQLAGQKGV QVPVSQPTTP T
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | EGLN2 | egl nine homolog 2 [Homo sapiens]. | 641 | 0.0 | O |
|
| EGLN1 | egl nine homolog 1 [Homo sapiens]. | 332 | 1e-90 | |
|
| EGLN3 | egl nine homolog 3 [Homo sapiens]. | 297 | 2e-80 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Egln2 | egl nine homolog 2 [Mus musculus]. | 616 | e-176 | O |
|
| Egln1 | egl nine homolog 1 [Mus musculus]. | 329 | 6e-90 | |
|
| Egln3 | egl nine homolog 3 [Mus musculus]. | 295 | 7e-80 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC484495 | PREDICTED: similar to EGL nine (C.elegans) homolog 2 isoform 1 isoform 1 [Canis familiaris]. | 639 | 0.0 | O |
|
| LOC488971 | PREDICTED: similar to egl nine homolog 1 [Canis familiaris]. | 329 | 6e-90 | |
|
| LOC480286 | PREDICTED: similar to Egl nine homolog 3, mitochondrial precursor (Hypoxia inducible factor prolyl hydroxylase 3) (HIF-prolyl hydroxylase 3) (HIF-PH3) (SM-20) [Canis familiaris]. | 298 | 2e-80 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| EGLN1 | egl nine homolog 1 [Bos taurus]. | 330 | 3e-90 | |
|
| EGLN3 | egl nine homolog 3 [Bos taurus]. | 296 | 5e-80 | |
|
| EGLN2 | EGL nine (C.elegans) homolog 2 [Bos taurus]. | 263 | 6e-70 | O |
|
| LOC100336408 | PREDICTED: egl nine homolog 1-like [Bos taurus]. | 132 | 2e-30 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| EGLN2 | PREDICTED: egl nine homolog 2 [Sus scrofa]. | 670 | 0.0 | |
|
| LOC100152368 | PREDICTED: egl nine homolog 3-like [Sus scrofa]. | 296 | 2e-80 | |
|
| EGLN1 | PREDICTED: hypothetical protein LOC100153461 [Sus scrofa]. | 202 | 6e-52 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-15320 | 4.1 | ATGAAAGGTGCTGGGAGGAGCATGGGCGTGAAAGTTGTCAGCCAAGAAATAAAAGTTTAC |
Assembly member: TOP