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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
UTR01_0056_G10
Library: UTR01 (Uterus)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,068)
[FASTA format sequence]
GGCTTCCGTC TTCTCCCTCC TCCAGCTTGT CCTCCGGTCG CGTTGCCACC ACAGCGGCCG
CTGCCGGGCG CGGTTACGGC GGGTCGGTTG GTGTGTCTTT CAGCGTCGAT TTCTGTGCAG
TTGAACGCCT GCCATGGCTG ATTTAGATCC GTTCGGCGCC CCCGCCGGCC CCTCGCTGGG
GAACGGAGTG GCCGGCGAGG AGGACCCGGC CGCGGCCTTC TTGGCGCAGC AGGAGAGCGA
GATTGCTGGC ATCGAGAACG ACGAGGCCTT CGCCATCCTG GACGGAGGCG CTCCTGGGCC
CCAGCCGCAC GGCGAGCCGC CGGGGGGTCC GGATGCCGTT GATGGAGTGA TGAATGGCGA
ATACTACCAG GAGAGTAATG GGCCGACAGA CAGTTATGCA GCTATTTCAC AAGTGGATCG
ATTGCAGTCA GAGCCTGAAA GTATCCGTAA ATGGAGAGAA GAGCAAACGG AACGCTTGGA
AGCCCTTGAT GCCAATTCTC GGAAGCAGGA AGCAGAGTGG AAAGAAAAAG CAATAAAGGA
GCTGGAAGAG TGGTATGCAA GGCAGGACGA GCAGTTACAA AAGACGAAAG CAAACAACAG
GGCAGCAGAA GAAGCCTTTG TAAATGACAT TGAAGAGTCG TCCCCAGGCA CGGAGTGGGA
ACGGGTGGCC CGGCTGTGTG ACTTTAACCC CAAGTCCAGC AAGCAGGCCA AAGATGTCTC
CCGCATGCGT TCTGTCCTCA TCTCCCTCAA GCAGGCCCCC CTGGTGCACT GAAGAGCCAC
CATGTGGAAA CACTACATCT GCAATATCTT AATCCTACTC AGTGAAGCTC TTCACAGTAA
TTGGATTAAT TATGTTGAGT TCTTTTGGAC CAAACCTTTT TGTCTTTAGA GTTGATCATT
GTTTGTGATT GCATGTTTCC TTCAACTGTG TTCTCCCTGG CATTCAGAGA GGAGCGGAGG
CGCCCAGGGA AGGGAGGGAG GCCTCCCAAG GGCAGCCTCA ACCTCTGCTT TTGTGCATTA
TTCTGAGAAT AAATTTCTGT TTAAAACTAT AAAAAAAAAA AAAAAAAA
Deduced amino acid sequence: (length: 212) [FASTA format sequence]
MADLDPFGAP AGPSLGNGVA GEEDPAAAFL AQQESEIAGI ENDEAFAILD GGAPGPQPHG
EPPGGPDAVD GVMNGEYYQE SNGPTDSYAA ISQVDRLQSE PESIRKWREE QTERLEALDA
NSRKQEAEWK EKAIKELEEW YARQDEQLQK TKANNRAAEE AFVNDIEESS PGTEWERVAR
LCDFNPKSSK QAKDVSRMRS VLISLKQAPL VH
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CLTA | clathrin light chain A isoform a [Homo sapiens]. | 368 | e-102 | O |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Clta | clathrin light chain A isoform a [Mus musculus]. | 369 | e-102 | O |
|
| Cltb | clathrin light chain B [Mus musculus]. | 237 | 1e-62 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC474765 | PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3 [Canis familiaris]. | 370 | e-102 | O |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CLTA | clathrin light chain A [Bos taurus]. | 355 | 3e-98 | O |
|
| CLTB | clathrin light chain B [Bos taurus]. | 245 | 6e-65 | O |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CLTA | PREDICTED: clathrin light chain A isoform 1 [Sus scrofa]. | 385 | e-107 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-18430 | 4.1 | AGGCCTCCCAAGGGCAGCCTCAACCTCTGCTTTTGTGCATTATTCTGAGAATAAATTTCT |
Assembly member: TOP