[Overview] [RefSeq] [UniGene] [Cluster & SNP] [Alignment]
Assembly Name: 20030826C-001638
Length:
904
Sequence:
[FASTA format sequence]
ACTGGGAGTG GAGGGCGAAC GGCTATGGCG GCGGTCGCAG CGAGTCCAGC GGCTGCGGCC
GAGGACCAAG AGCTACAGCG CGAAGCGGTG CCGGGCCTCG AGAGCCAGCG GCGCCAGATC
GAAAACGGCG AGAATGGGCG AGGGCGTCCG CTGCAGGCCG GCGAAAGCTG GTTCCTCGTG
GAGCAGCACT GGTACCAGAA GTGGGAAGAG TACGTGCAGG GAGGAGACCA GGACTCCAGC
ACCTCCCCTG GCTGCATCAA CAATGCTGGG CTCTTTGAAG ACCAGGTAAA CTGGCGCCTC
AAGAAGGGAC TGGTGGAAGG TGAGGACTAT GTGCTGCTCC CAGCGGCTGC TTGGCATTAC
CTGGTCAACT GGTATGGTCT AGAGCATGGC CAGCCTCCTG TCGAACGCAA GGTCGTGGAG
CTGCCCGGCA TCCAGAAGGT CGAAGTGTAC CCAGTAGAAC TGCTGCTTGT CCAGCACAGT
GATATGGACA CAGCCCACAC TGCTCAATTC AGCCACACAG ATTCGCTCGA CCTCGTCTTA
CACACCGCGC GGGAGCAGTT TCTGGTGAGC CCCCAGGAGG AGACACGGCT GTGGATCAAG
AACGCAGAGG GCTCCTTTGA GAGGTTGTGC AACACACACG TCACAGTGCT TGACGCCGCT
CTCAAGACTG GGCAGGTGGT CATCATGGAG ACCCGAAACA AGGATGGCAC TTGGCCCAGC
GCACAGCCGC ACGCCATGAA CAGCGCCACG GAGGAGGAGG AGGACTTCCA GGGCCAGCCA
GGCATCTGCG GTCTCACCAA TCTGGGCAAC ACGTGCTTCA TGAACTCGGC CCTGCAGTGC
CTCAGCAACG TGCCGCAGCT CACCGAGTAC TTCCTCAAAA ACCGCTACCT GGAGGAGCTC
ACCT
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | USP11 | ubiquitin specific protease 11; ubiquitin carboxyl-terminal hydrolase, X-linked; ubiquitin thiolesterase 11; deubiquitinating enzyme 11 | 479 | e-136 | |
|
|
| USP15 | ubiquitin specific protease 15; deubiquitinating enzyme | 215 | 2e-56 | O |
|
|
| USP4 | ubiquitin specific protease, proto-oncogene; Unph | 197 | 8e-51 | O |
|
|
| USP32 | ubiquitin specific protease 32; ubiquitin specific protease | 108 | 3e-24 | |
|
|
| USP6 | ubiquitin specific protease 6; tre-2 oncogene; hyperpolymorphic gene 1 | 75.1 | 5e-14 | |
|
|
| USP2 | ubiquitin specific protease 2 isoform a; ubiquitin specific protease 12; ubiquitin specific protease 9 | 57.4 | 1e-08 | |
|
|
| USP8 | ubiquitin specific protease 8 | 57.4 | 1e-08 | |
|
|
| USP2 | ubiquitin specific protease 2 isoform b; ubiquitin specific protease 12; ubiquitin specific protease 9 | 55.8 | 3e-08 | O |
|
|
| USP33 | ubiquitin specific protease 33; pVHL-interacting deubiquitinating enzyme 1 | 54.3 | 9e-08 | O |
|
|
| USP20 | ubiquitin specific protease 20; pVHL-interacting deubiquitinating enzyme 2 | 53.5 | 1e-07 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
|
| Usp15 | ubiquitin specific protease 15; granule cell antiserum positive 18 | 203 | 8e-53 | O |
|
|
| Usp4 | ubiquitin specific protease 4 (proto-oncogene); ubiquitous nuclear protein | 199 | 2e-51 | O |
|
|
| Usp11 | ubiquitin specific protease 11 | 134 | 6e-32 | O |
|
|
| Usp8 | ubiquitin specific protease 8; putative deubiquitinating enzyme | 57.8 | 6e-09 | |
|
|
| Usp2 | ubiquitin-specific protease 2; ubiquitin-specific protease UBP41 | 55.8 | 2e-08 | O |
|
|
| Usp33 | Vhlh-interacting deubiquitinating enzyme 1; pVHL-interacting deubiquitinating enzyme 1 | 55.5 | 3e-08 | O |
|
|
| Usp50 | RIKEN cDNA 4930511O11 | 54.7 | 5e-08 | O |
|
|
| Usp20 | ubiquitin specific protease 20 | 53.5 | 1e-07 | O |
| Definition | Score | E value | FL | ||
|---|---|---|---|---|---|
 |
 | Homo sapiens ubiquitin specific protease 11 (USP11), mRNA | 718 | 0.0 | |
|
|
| Mus musculus ubiquitin specific protease 11 (Usp11), mRNA | 325 | 2e-87 | O |
|
|
| Mus musculus ubiquitin specific protease 4 (proto-oncogene) (Usp4), mRNA | 56 | 3e-06 | |
|
|
| Homo sapiens ubiquitin specific protease 32 (USP32), mRNA | 44.1 | 0.012 | |
|
|
| 602621215F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE:4746819 5', mRNA sequence | 44.1 | 0.012 | |
|
|
| Homo sapiens KIAA1765 protein (KIAA1765), mRNA | 44.1 | 0.012 | |
|
|
| Homo sapiens ubiquitin specific protease 2 (USP2), transcript variant 1, mRNA | 44.1 | 0.012 | |
|
|
| 706830 MARC 6BOV Bos taurus cDNA 5', mRNA sequence | 40.1 | 0.19 | |
|
|
| Mus musculus RIKEN cDNA 5430437P03 gene (5430437P03Rik), mRNA | 40.1 | 0.19 | |
|
|
| Mus musculus ubiquitin specific protease 2 (Usp2), mRNA | 40.1 | 0.19 |
|
20030826C-001638 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVR01_0035_H09.b.ab1 : ttttttttttttttttcctacgactaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 :
20030826C-001638 : ...................................ACTGGGAGTGGAGGGCGAACGGCTA
---------+---------+---------+---------+---------+---------+ 25
OVR01_0035_H09.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxccgttttACTGGGAGTGGAGGGCGAACGGCTA
OVRM1_0150_B01.b.ab1 : nagtttgtcx
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 : gttgtgacttgacagtttgtcxxxxx
20030826C-001638 : TGGCGGCGGTCGCAGCGAGTCCAGCGGCTGCGGCCGAGGACCAAGAGCTACAGCGCGAAG
---------+---------+---------+---------+---------+---------+ 85
OVR01_0035_H09.b.ab1 : TGGCGGCGGTCGCAGCGAGTCCAGCGGCTGCGGCCGAGGACCAAGAGCTACAGCGCGAAG
OVRM1_0150_B01.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxaagcagaaa
LVRM1_0164_E08.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxagcagaaa
MLN01_0063_H08.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxagcagaaa
20030826C-001638 : CGGTGCCGGGCCTCGAGAGCCAGCGGCGCCAGATCGAAAACGGCGAGAATGGGCGAGGGC
---------+---------+---------+---------+---------+---------+ 145
OVR01_0035_H09.b.ab1 : CGGTGCCGGGCCTCGAGAGCCAGCGGCGCCAGATCGAAAACGGCGAGAATGGGCGAGGGC
OVRM1_0150_B01.b.ab1 : atggcgcctgcgaatgagcaaagtttgtgacgcgacgaggtttttgcctctggcggagcc
LVRM1_0164_E08.b.ab1 : atggcgcctgcgaatgagcaaagtttgtgacgcgacgaggtttttgcctctggcggagcc
MLN01_0063_H08.b.ab1 : atggcgcctgcgaatgagcaaagtttgtgacgcgacgaggtttttgcctctggcggagcc
20030826C-001638 : GTCCGCTGCAGGCCGGCGAAAGCTGGTTCCTCGTGGAGCAGCACTGGTACCAGAAGTGGG
---------+---------+---------+---------+---------+---------+ 205
OVR01_0035_H09.b.ab1 : GTCCGCTGCAGGCCGGCGAAAGCTGGTTCCTCGTGGAGCAGCACTGGTACCAGAAGTGGG
OVRM1_0150_B01.b.ab1 : cttcccaggacgggagaaagtgcaGGTTCCTCGTGGAGCAGCACTGGTACCAGAAGTGGG
LVRM1_0164_E08.b.ab1 : cttcccaggacgggagaaagtgcaGGTTCCTCGTGGAGCAGCACTGGTACCAGAAGTGGG
MLN01_0063_H08.b.ab1 : cttcccaggacgggagaaagtgcaGGTTCCTCGTGGAGCAGCACTGGTACCAGAAGTGGG
20030826C-001638 : AAGAGTACGTGCAGGGAGGAGACCAGGACTCCAGCACCTCCCCTGGCTGCATCAACAATG
---------+---------+---------+---------+---------+---------+ 265
OVR01_0035_H09.b.ab1 : AAGAGTACGTGCAGGGAGGAGACCAGGACTCCAGCACCTCCCCTGGCTGCATCAACAATG
OVRM1_0150_B01.b.ab1 : AAGAGTACGTGCAGGGAGGAGACCAGGACTCCAGCACCTCCCCTGGCTGCATCAACAATG
LVRM1_0164_E08.b.ab1 : AAGAGTACGTGCAGGGAGGAGACCAGGACTCCAGCACCTCCCCTGGCTGCATCAACAATG
MLN01_0063_H08.b.ab1 : AAGAGTACGTGCAGGGAGGAGACCAGGACTCCAGCACCTCCCCTGGCTGCATCAACAATG
20030826C-001638 : CTGGGCTCTTTGAAGACCAGGTAAACTGGCGCCTCAAGAAGGGACTGGTGGAAGGTGAGG
---------+---------+---------+---------+---------+---------+ 325
OVR01_0035_H09.b.ab1 : CTGGGCTCTTTGAAGACCAGGTAAACTGGCGCCTCAAGAAGGGACTGGTGGAAGGTGAGG
OVRM1_0150_B01.b.ab1 : CTGGGCTCTTTGAAGACCAGGTAAACTGGCGCCTCAAGAAGGGACTGGTGGAAGGTGAGG
LVRM1_0164_E08.b.ab1 : CTGGGCTCTTTGAAGACCAGGTAAACTGGCGCCTCAAGAAGGGACTGGTGGAAGGTGAGG
MLN01_0063_H08.b.ab1 : CTGGGCTCTTTGAAGACCAGGTAAACTGGCGCCTCAAGAAGGGACTGGTGGAAGGTGAGG
20030826C-001638 : ACTATGTGCTGCTCCCAGCGGCTGCTTGGCATTACCTGGTCAACTGGTATGGTCTAGAGC
---------+---------+---------+---------+---------+---------+ 385
OVR01_0035_H09.b.ab1 : ACTATGTGCTGCTCCCAGCGGCTGCTTGGCATTACCTGGTCAACTGGTATGGTCTAGAGC
OVRM1_0150_B01.b.ab1 : ACTATGTGCTGCTCCCAGCGGCTGCTTGGCATTACCTGGTCAACTGGTATGGTCTAGAGC
LVRM1_0164_E08.b.ab1 : ACTATGTGCTGCTCCCAGCGGCTGCTTGGCATTACCTGGTCAACTGGTATGGTCTAGAGC
MLN01_0063_H08.b.ab1 : ACTATGTGCTGCTCCCAGCGGCTGCTTGGCATTACCTGGTCAACTGGTATGGTCTAGAGC
20030826C-001638 : ATGGCCAGCCTCCTGTCGAACGCAAGGTCGTGGAGCTGCCCGGCATCCAGAAGGTCGAAG
---------+---------+---------+---------+---------+---------+ 445
OVR01_0035_H09.b.ab1 : ATGGCCAGCCTCCTGTCGAACGCAAGGTCGTGGAGCTGCCCGGCATCCAGAAGGTCGAAG
OVRM1_0150_B01.b.ab1 : ATGGCCAGCCTCCTGTCGAACGCAAGGTCGTGGAGCTGCCCGGCATCCAGAAGGTCGAAG
LVRM1_0164_E08.b.ab1 : ATGGCCAGCCTCCTGTCGAACGCAAGGTCGTGGAGCTGCCCGGCATCCAGAAGGTCGAAG
MLN01_0063_H08.b.ab1 : ATGGCCAGCCTCCTGTCGAACGCAAGGTCGTGGAGCTGCCCGGCATCCAGAAGGTCGAAG
20030826C-001638 : TGTACCCAGTAGAACTGCTGCTTGTCCAGCACAGTGATATGGACACAGCCCACACTGCTC
---------+---------+---------+---------+---------+---------+ 505
OVR01_0035_H09.b.ab1 : TGTACCCAGTAGAACTGCTGCTTGTCCAGCACAGTGATATGGACACAGCCCACACTGCTC
OVRM1_0150_B01.b.ab1 : TGTACCCAGTAGAACTGCTGCTTGTCCAGCACAGTGATATGGACACAGCCCACACTGCTC
LVRM1_0164_E08.b.ab1 : TGTACCCAGTAGAACTGCTGCTTGTCCAGCACAGTGATATGGACACAGCCCACACTGCTC
MLN01_0063_H08.b.ab1 : TGTACCCAGTAGAACTGCTGCTTGTCCAGCACAGTGATATGGACACAGCCCACACTGCTC
20030826C-001638 : AATTCAGCCACACAGATTCGCTCGACCTCGTCTTACACACCGCGCGGGAGCAGTTTCTGG
---------+---------+---------+---------+---------+---------+ 565
OVR01_0035_H09.b.ab1 : AATTCAGCCACACAGATTCGCTCGACCTCGTCTTACACACCGCGCGGGAGCAGTTTCTGG
OVRM1_0150_B01.b.ab1 : AATTCAGCCACACAGATTCGCTCGACCTCGTCTTACACACCGCGCGGGAGCAGTTTCTGG
LVRM1_0164_E08.b.ab1 : AATTCAGCCACACAGATTCGCTCGACCTCGTCTTACACACCGCGCGGGAGCAGTTTCTGG
MLN01_0063_H08.b.ab1 : AATTCAGCCACACAGATTCGCTCGACCTCGTCTTACACACCGCGCGGGAGCAGTTTCTGG
20030826C-001638 : TGAGCCCCCAGGAGGAGACACGGCTGTGGATCAAGAACGCAGAGGGCTCCTTTGAGAGGT
---------+---------+---------+---------+---------+---------+ 625
OVR01_0035_H09.b.ab1 : TGAGCCCCCAGGAGGAGACACGGCTGTGGATCAAGAACGCAGAGGGCTCCTTTGAGAGGT
OVRM1_0150_B01.b.ab1 : TGAGCCCCCAGGAGGAGACACGGCTGTGGATCAAGAACGCAGAGGGCTCCTTTGAGAGGT
LVRM1_0164_E08.b.ab1 : TGAGCCCCCAGGAGGAGACACGGCTGTGGATCAAGAACGCAGAGGGCTCCTTTGAGAGGT
MLN01_0063_H08.b.ab1 : TGAGCCCCCAGGAGGAGACACGGCTGTGGATCAAGAACGCAGAGGGCTCCTTTGAGAGGT
20030826C-001638 : TGTGCAACACACACGTCACAGTGCTTGACGCCGCTCTCAAGACTGGGCAGGTGGTCATCA
---------+---------+---------+---------+---------+---------+ 685
OVR01_0035_H09.b.ab1 : TGTGCAACACACACGTCACAGTGCTTGACGCCGCTCTCAAGACTGGGCAGGTGGTCATCA
OVRM1_0150_B01.b.ab1 : TGTGCAACACACACGTCACAGTGCTTGACGCCGCTCTCAAGACTGGGCAGGTGGTCATCA
LVRM1_0164_E08.b.ab1 : TGTGCAACACACACGTCACAGTGCTTGACGCCGCTCTCAAGACTGGGCAGGTGGTCATCA
MLN01_0063_H08.b.ab1 : TGTGCAACACACACGTCACAGTGCTTGACGCCGCTCTCAAGACTGGGCAGGTGGTCATCA
20030826C-001638 : TGGAGACCCGAAACAAGGATGGCACTTGGCCCAGCGCACAGCCGCACGCCATGAACAGCG
---------+---------+---------+---------+---------+---------+ 745
OVR01_0035_H09.b.ab1 : TGGAGACCCGAAACAAGGATGGCACTTGGCCCAGCGCACAGCCGCACGCCATGAACAGCG
OVRM1_0150_B01.b.ab1 : TGGAGACCCGAAAC*AGGATGGCACTTGGCCCAGCGCACAAGCGCACGCCATGAACAGCG
LVRM1_0164_E08.b.ab1 : TGGAGACCCGAAACAAGGATGGCACTTGGCCCAGCGCACAGCCGCACGCCATGAACAGCG
MLN01_0063_H08.b.ab1 : TGGAGACCCGAAACAAGGATGGCACTTGGCCCAGCGCACAGCCGCACGCCATGAACAGCG
20030826C-001638 : CC*ACGGAGGAGGAGGAGGACTTCCAGGGCCAGCCAGGCATCTGCGGTCTCACCAATCTG
---------+---------+---------+---------+---------+---------+ 804
OVR01_0035_H09.b.ab1 : CC*ACGGAGGAGGAGGAGGACTTCCAGGGCCAGCCAGGCATCTGCGGTCTCACCAATCTG
OVRM1_0150_B01.b.ab1 : CC*CGGGAGGAGGAGGAGGATTTCCAGGCCCAGCCAGGCTTCTGCGGTCTCACCaat
LVRM1_0164_E08.b.ab1 : CCNACGGGAGGAGAGGAGGACTTCCAGGGCCAGCCAGGCATCTGCGGTCTCACCNATCTG
MLN01_0063_H08.b.ab1 : CC*ACGGAGGAGGAGGAGGACTTCCAGGGCCAGCCAGGCATCTGCGGTCTCACCAATCTG
20030826C-001638 : GGCAACACGTGCTTCATGAACTCGGCCCTGCAGTGCCTCAGCAACGTGCCGCAGCTCACC
---------+---------+---------+---------+---------+---------+ 864
OVR01_0035_H09.b.ab1 : GGCAACACGTGCTTCATGAACTCGGCCCTGCAGTGCCTCAGCAACGTGCCGCAGCTCACC
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 : GGGCACACGTGCtt
MLN01_0063_H08.b.ab1 : GGCAACACGTGCCTCATGAACTCGGCCCTGCAGTGCCTCAGCAACGTGCCGCAGCTCACC
20030826C-001638 : GAGTACTT*CCTCAAAAACCGCTACCTGGAGGAGCTCACCT...................
---------+---------+---------+---------+---------+---------+ 904
OVR01_0035_H09.b.ab1 : GAGTACTTTCCTCAAAAACCCCTACCTtgaaggagctcaactttctgccacccgcttggg
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 : GAGTACTT*CCTCAAAAACCGCTACCTGGAGGAGCTCACCTtctgcaacccgctgggcat
20030826C-001638 : ............................................................
---------+---------+---------+---------+---------+---------+ 904
OVR01_0035_H09.b.ab1 : catgaagggggaagatcgcccaaggccttacccggacttggtgaaacaaggcgggggttc
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 : ggaaggggagatcgcccgaggcctacgccgacctgggtgaaccaggcgtggttcgggcaa
20030826C-001638 : ............................................................
---------+---------+---------+---------+---------+---------+ 904
OVR01_0035_H09.b.ab1 : cggccccccccccccttcctttcgtgcccccccggggttcaaaaaaccaaggggcgggcc
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 : ccacggctccttcgtgccccaagggttcaaaaacaaaggtcgggccctttccgttcccat
20030826C-001638 : ............................................................
---------+---------+---------+---------+---------+---------+ 904
OVR01_0035_H09.b.ab1 : cccttttcccttccccatttttcttggggctttccccccaaacatttaacctcccaaggg
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 : tttctggcctaccagccaccttgactcccgggaaccgccggtctttcccccgggaggggc
20030826C-001638 : ............................................................
---------+---------+---------+---------+---------+---------+ 904
OVR01_0035_H09.b.ab1 : gaaagcttttttttgtttccttttccctccccctggggaaattgggggctttgtgccccg
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 : tgcccaagaaccccaccgggttcaaaaaaaagaaaaacttgaactttgccaatccttcgg
20030826C-001638 : ............................................................
---------+---------+---------+---------+---------+---------+ 904
OVR01_0035_H09.b.ab1 : aaaagggggacccccctcccccaccccccgcgggggtgt
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 : ggaggccaaattagggagggggctcagggagcccgggcaaaaccaaaaagggggaaaaaa
20030826C-001638 : ............................................................
---------+---------+---------+---------+---------+---------+ 904
OVR01_0035_H09.b.ab1 :
OVRM1_0150_B01.b.ab1 :
LVRM1_0164_E08.b.ab1 :
MLN01_0063_H08.b.ab1 : tttcggtaatcgggaaccttttcatggggccttctaaatccgccgggagggc
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