[Overview] [RefSeq] [UniGene] [Cluster & SNP] [Alignment]
Assembly Name: 20050322C-004826
Length:
1,216
Sequence:
[FASTA format sequence]
CTCGACCCCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC
CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC
ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG
GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC
AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGCTGAGCGA GAAGAAAGCC
TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG
TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG
GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG
GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC
GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG
GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG
AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG
GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC TGAGACCCGT
GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA CCTGGAAGAA
AAACTTGTCC AGGCCAAAGA AAAGAACGTG GGCTTTACTC AAACACTGGA TCCGACACTA
AACGACCTAA ACTGTATATA ACCAAACCAA AAAAATCTCG TTCCCTCCAA AACTTCCCAA
GCTACGTTGT TTTTCCCCTT CTCTTGTAAG AAAGTTTTCT TTTGTTTTTT GCCCCCTTTG
CTTTTGCCTG AAAAAGGGCA AGGCAAAATT TATAAATACC CGTGAACCCA ATATTTTTTT
TGTTATCAAA AAAAAACTTT TTTAAACCCC CCAAGTTTAA AAATTCTTTT TTTCCTTTTC
CCTTTTTTTT TTTTCCAAGG GTGGGCCCCC CCCCCCCCTT TTTTTTTTCT CCCACCCCTT
CTTTTTTTTT TTTTTT
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | TPM2 | tropomyosin 2 (beta) | 307 | 9e-84 | O |
|
|
| TPM2 | tropomyosin 2 (beta) | 301 | 8e-82 | O |
|
|
| TPM1 | tropomyosin 1 (alpha) | 290 | 2e-78 | O |
|
|
| TPM4 | tropomyosin 4 | 239 | 3e-63 | O |
|
|
| TPM3 | tropomyosin 3 | 199 | 3e-51 | O |
|
|
| TPM3 | tropomyosin 3 | 178 | 8e-45 | O |
|
|
| LOC389667 | similar to tropomyosin 4 | 177 | 2e-44 | O |
|
|
| similar to tropomyosin 4 | 174 | 1e-43 | O | |
|
|
| LOC402643 | similar to tropomyosin 3 | 105 | 7e-23 | O |
|
|
| LOC402643 | similar to tropomyosin 3 | 105 | 7e-23 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
|
| Tpm1 | tropomyosin 1, alpha | 318 | 3e-87 | O |
|
|
| Tpm2 | tropomyosin 2, beta | 309 | 3e-84 | O |
|
|
| Tpm3 | tropomyosin 3, gamma | 293 | 1e-79 | O |
|
|
| Tpm4 | tropomyosin 4 | 229 | 3e-60 | O |
| Definition | Score | E value | FL | ||
|---|---|---|---|---|---|
 |
 | PREDICTED: Homo sapiens similar to tropomyosin 4 (LOC285321), mRNA | 801 | 0.0 | O |
|
|
| Mus musculus tropomyosin 4, mRNA (cDNA clone MGC:38384 IMAGE:5345587), complete cds | 611 | e-173 | O |
|
|
| full-length cDNA clone CS0DK002YI10 of HeLa cells Cot 25-normalized of Homo sapiens (human) | 357 | 7e-97 | |
|
|
| BP157053 full-length enriched swine cDNA library, adult spleen Sus scrofa cDNA clone SPL010009B03 5', mRNA sequence | 295 | 2e-78 | |
|
|
| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1100001I18 product:tropomyosin 2, beta, full insert sequence | 283 | 9e-75 | O |
|
|
| Mouse skeletal muscle beta tropomyosin mRNA, complete cds. | 258 | 5e-67 | O |
|
|
| Z98799 pT7T318U Sus scrofa domestica cDNA clone pAZ3A08 similar to alpha tropomyosin, mRNA sequence | 244 | 7e-63 | |
|
|
| 6664 MARC BSM Bos taurus cDNA 5', mRNA sequence | 208 | 4e-52 | |
|
|
| Homo sapiens cDNA FLJ32003 fis, clone NT2RP7009397 | 163 | 2e-38 | |
|
|
| Bos taurus TPM3 mRNA for tropomyosin 3, complete cds | 151 | 8e-35 | O |
|
20050322C-004826 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0200_C05.b.ab1 : gagttgtcatxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0094_A06.b.ab1 : tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0062_E04.b.ab1 : gccttttatgggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20050322C-004826 : ............................CTCGACCCCGACGCCGCTGCCGCCGCAGGCCC
---------+---------+---------+---------+---------+---------+ 32
OVRM1_0200_C05.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACCCCGACGCCGCTGCCGCCGCAGGCCC
OVRM1_0094_A06.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACACCGACGCCGCTGCCGCCGCAGGCCC
UTR01_0062_E04.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACCCCGACGCCGCTGCCGCCGCAGGCCC
20050322C-004826 : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
---------+---------+---------+---------+---------+---------+ 92
OVRM1_0200_C05.b.ab1 : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
OVRM1_0094_A06.b.ab1 : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
UTR01_0062_E04.b.ab1 : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
20050322C-004826 : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
---------+---------+---------+---------+---------+---------+ 152
OVRM1_0200_C05.b.ab1 : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
OVRM1_0094_A06.b.ab1 : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
UTR01_0062_E04.b.ab1 : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
20050322C-004826 : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
---------+---------+---------+---------+---------+---------+ 212
OVRM1_0200_C05.b.ab1 : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
OVRM1_0094_A06.b.ab1 : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
UTR01_0062_E04.b.ab1 : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
20050322C-004826 : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
---------+---------+---------+---------+---------+---------+ 272
OVRM1_0200_C05.b.ab1 : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
OVRM1_0094_A06.b.ab1 : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
UTR01_0062_E04.b.ab1 : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
20050322C-004826 : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
---------+---------+---------+---------+---------+---------+ 332
OVRM1_0200_C05.b.ab1 : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
OVRM1_0094_A06.b.ab1 : AAAGCTGGAGTTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
UTR01_0062_E04.b.ab1 : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
20050322C-004826 : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
---------+---------+---------+---------+---------+---------+ 392
OVRM1_0200_C05.b.ab1 : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
OVRM1_0094_A06.b.ab1 : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
UTR01_0062_E04.b.ab1 : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
20050322C-004826 : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
---------+---------+---------+---------+---------+---------+ 452
OVRM1_0200_C05.b.ab1 : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
OVRM1_0094_A06.b.ab1 : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
UTR01_0062_E04.b.ab1 : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
20050322C-004826 : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
---------+---------+---------+---------+---------+---------+ 512
OVRM1_0200_C05.b.ab1 : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
OVRM1_0094_A06.b.ab1 : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCGGGAGATGCAGCTCAA
UTR01_0062_E04.b.ab1 : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
20050322C-004826 : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
---------+---------+---------+---------+---------+---------+ 572
OVRM1_0200_C05.b.ab1 : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
OVRM1_0094_A06.b.ab1 : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
UTR01_0062_E04.b.ab1 : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
20050322C-004826 : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
---------+---------+---------+---------+---------+---------+ 632
OVRM1_0200_C05.b.ab1 : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
OVRM1_0094_A06.b.ab1 : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
UTR01_0062_E04.b.ab1 : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
20050322C-004826 : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
---------+---------+---------+---------+---------+---------+ 692
OVRM1_0200_C05.b.ab1 : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
OVRM1_0094_A06.b.ab1 : ATGTGGTGACCTGGAAGAAGAACTCTAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
UTR01_0062_E04.b.ab1 : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
20050322C-004826 : TG*CATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGT
---------+---------+---------+---------+---------+---------+ 751
OVRM1_0200_C05.b.ab1 : TGNCATCT*GAAAGTATTCTGAAAAGGAGGATAAATATGAn
OVRM1_0094_A06.b.ab1 : TG*CATCTCGAAAGTATTCTGAAAAGGAGGATAAATACGAAGAAGAGATTCAACTTCTGT
UTR01_0062_E04.b.ab1 : TG*CATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGT
20050322C-004826 : CTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAAC
---------+---------+---------+---------+---------+---------+ 811
OVRM1_0200_C05.b.ab1 :
OVRM1_0094_A06.b.ab1 : CTGACAAACTGAAAGAGGCT
UTR01_0062_E04.b.ab1 : CTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAAC
20050322C-004826 : TGGAAAAGACCATCGATGACCTGGAAGAAAAACTTGTCCAGGCCAAAGAAAAGAACGTGG
---------+---------+---------+---------+---------+---------+ 871
OVRM1_0200_C05.b.ab1 :
OVRM1_0094_A06.b.ab1 :
UTR01_0062_E04.b.ab1 : TGGAAAAGACCATCGATGACCTGGAAGAAAAACTTGTCCAGGCCAAAGAAAAGAACGTGG
20050322C-004826 : GCTTTACTCAAACACTGGATCCGACACTAAACGACCTAAACTGTATATAACCAAACCAAA
---------+---------+---------+---------+---------+---------+ 931
OVRM1_0200_C05.b.ab1 :
OVRM1_0094_A06.b.ab1 :
UTR01_0062_E04.b.ab1 : GCTTTACTCAAACACTGGATCCGACACTAAACGACCTAAACTGTATATAACCAAACCAAA
20050322C-004826 : AAAATCTCGTTCCCTCCAAAACTTCCCAAGCTACGTTGTTTTTCCCCTTCTCTTGTAAGA
---------+---------+---------+---------+---------+---------+ 991
OVRM1_0200_C05.b.ab1 :
OVRM1_0094_A06.b.ab1 :
UTR01_0062_E04.b.ab1 : AAAATCTCGTTCCCTCCAAAACTTCCCAAGCTACGTTGTTTTTCCCCTTCTCTTGTAAGA
20050322C-004826 : AAGTTTTCTTTTGTTTTTTGCCCCCTTTGCTTTTGCCTGAAAAAGGGCAAGGCAAAATTT
---------+---------+---------+---------+---------+---------+ 1051
OVRM1_0200_C05.b.ab1 :
OVRM1_0094_A06.b.ab1 :
UTR01_0062_E04.b.ab1 : AAGTTTTCTTTTGTTTTTTGCCCCCTTTGCTTTTGCCTGAAAAAGGGCAAGGCAAAATTT
20050322C-004826 : ATAAATACCCGTGAACCCAATATTTTTTTTGTTATCAAAAAAAAACTTTTTTAAACCCCC
---------+---------+---------+---------+---------+---------+ 1111
OVRM1_0200_C05.b.ab1 :
OVRM1_0094_A06.b.ab1 :
UTR01_0062_E04.b.ab1 : ATAAATACCCGTGAACCCAATATTTTTTTTGTTATCAAAAAAAAACTTTTTTAAACCCCC
20050322C-004826 : CAAGTTTAAAAATTCTTTTTTTCCTTTTCCCTTTTTTTTTTTTCCAAGGGTGGGCCCCCC
---------+---------+---------+---------+---------+---------+ 1171
OVRM1_0200_C05.b.ab1 :
OVRM1_0094_A06.b.ab1 :
UTR01_0062_E04.b.ab1 : CAAGTTTAAAAATTCTTTTTTTCCTTTTCCCTTTTTTTTTTTTCCAAGGGTGGGCCCCCC
20050322C-004826 : CCCCCCCTTTTTTTTTTCTCCCACCCCTTCTTTTTTTTTTTTTTT...............
---------+---------+---------+---------+---------+---------+ 1216
OVRM1_0200_C05.b.ab1 :
OVRM1_0094_A06.b.ab1 :
UTR01_0062_E04.b.ab1 : CCCCCCCTTTTTTTTTTCTCCCACCCCTTCTTTTTTTTTTTTTTT
TOP
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