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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  OVR01_0011_G02

Library: OVR01 (Ovary)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,487)  [FASTA format sequence]
CACAGCGCGG GGCTACGAGG GTGCGCAGTT CCCCGGGTCC CCCGAGTCCC CGACGCCCGG
CGAGGAGATC TGGGTTTTCC AGCGCGCCCC GCAAGACGCC TCTGCTCAGG AGCCCGGCGC
CGGGGCCCCG CGATGGCCGC GGGCCGCAGC CTCAGGGAGC TGCTGCCGCG TGGGTGCCGG
GGCGCCCCTC CCTAGCGGGG CGCAGCCTGC GCCCGGTCCC CGCCCGACCA GCGGAATGGG
GGGCGGAGGG TCTGCCCTGA GGGTCTGCGC GGACCACCGC GGGGGCATCA ACTGGCTCAG
CCTGAGCCCC GACGGGCAGC GCCTGCTGAC GGGCAGCGAG GACGGCACCG CCCGGCTCTG
GAGCACCGCG GACGGCCAGT GCTGCGCCCT CCTGCAAGGA CATGAAAGCT ACGTGACCTT
CTGCCAGCTG GAGGACGAAG CTGCCTTCAC GTGCAGCGCT GACTGCACCA TCCGGAAGTG
GGACGTGCTG ACCGGGCAGT GTCTGCAGGT GTTCCGGGGA CACACATCCA TTGTGAACAG
GATCCTGGTC ACCAACAACC AGCTCTTCAG CAGTTCCTAT GACCGGACAG CTCGCGCCTG
GAGTGTAGAC AAAGGGCAGG TGTCGCGGGA GTTCCGGGGC CACCGCAACT GTGTGCTGAC
TCTAGCCTAC TCTGCCCCCT GGGACCTGCC TGGGGCTCCC TGCGTGGAGG AGGCCGTGGC
TGGGGGGCTT CTGGTGACGG GAAGCACAGA CGGCACAGCC AAGGTGTGGC AGGTGGCCAG
TGGCTGCTGC CACCAGACGC TGCGGGGCCA CACGGGCGCC GTGCTCTGCC TGGTGTTGGA
CACACCTGGC CACACAGCCT TCACCGGCAG CACCGACGCC ACCATCCGCG CCTGGGACAT
CCTGAGTGGG GAGCCGCTGC GCGTGTTCCG GGAGCACCAG GGCTCCATCA TCTGTCTGGA
GCTGGTGAAC CGGCACGTGT ACTCGGGCAG CGCCGACAGG ACGGTCAAGT GCTGGCTGGC
GGACACGGGC GAGCGCGTGC GCACGTTCGC CGCCCACAGA CACAGCGTGA GCGCCCTCAA
GTACCACGCG GGCACCTGTA AGTGACCCCC TCGCCCAGGG CCCCTCTGCT TCCTCTTACT
CCCCTCCCTG CTGAGCCTCA GCTGCATTCA GTTTGGTCAG CGGCCAAGGG CGGTAGCCGT
GCACGTTTAT TCCTCCGCGG AAATAAGGTC CAAACAGGGG TGTGGGGAGT TCCCGTCGTG
GCTCAGCGGT AATGAACCCG ACTAGTATCC ATGAGGACGC GGGTTCGATC CCTGGCCTCG
TTCAGTGGGC TAAGAATCCG GCGTCGCCAT GAGCGGTAGT GTAGGTCGCA GTCTTGGCTC
CAGCGTTGCT GTGGCTGTGG TGTAGACCAG CAGCGCAGCT CCAATTCCAC CACTAACCTG
GGAATTTCCA TTTGCTGCAG GTGTGGCCCT AAAAAAAAAA AAAAAAA

Deduced amino acid sequence:  (length: 289) [FASTA format sequence]
MGGGGSALRV CADHRGGINW LSLSPDGQRL LTGSEDGTAR LWSTADGQCC ALLQGHESYV
TFCQLEDEAA FTCSADCTIR KWDVLTGQCL QVFRGHTSIV NRILVTNNQL FSSSYDRTAR
AWSVDKGQVS REFRGHRNCV LTLAYSAPWD LPGAPCVEEA VAGGLLVTGS TDGTAKVWQV
ASGCCHQTLR GHTGAVLCLV LDTPGHTAFT GSTDATIRAW DILSGEPLRV FREHQGSIIC
LELVNRHVYS GSADRTVKCW LADTGERVRT FAAHRHSVSA LKYHAGTCK

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		WDR86	WD repeat-containing protein 86 [Homo sapiens].	558	e-159
		FBXW7	F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].	145	1e-34
		FBXW11	F-box/WD repeat-containing protein 11 isoform C [Homo sapiens].	114	2e-25

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Wdr86	WD repeat domain 86 [Mus musculus].	525	e-149
		Fbxw7	F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].	145	8e-35
		Taf5	transcription initiation factor TFIID subunit 5 [Mus musculus].	111	1e-24

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC475544	PREDICTED: similar to F-box and WD-40 domain protein 7, archipelago homolog [Canis familiaris].	373	e-103
		LOC475465	PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis familiaris].	145	1e-34
		LOC486851	PREDICTED: similar to F-box/WD-repeat protein 1A (F-box and WD-repeats protein beta-TrCP) (E3RSIkappaB) (pIkappaBalpha-E3 receptor subunit) isoform 3 [Canis familiaris].	115	8e-26

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		WDR86	WD repeat-containing protein 86 [Bos taurus].	541	e-154
		FBXW7	F-box/WD repeat-containing protein 7 [Bos taurus].	145	1e-34
		WDR38	WD repeat-containing protein 38 [Bos taurus].	139	5e-33
		TAF5	transcription initiation factor TFIID subunit 5 [Bos taurus].	111	1e-24

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100624234	PREDICTED: vegetative incompatibility protein HET-E-1-like [Sus scrofa].	182	3e-46
		FBXW7	PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus scrofa].	142	5e-34
		WDR5	PREDICTED: WD repeat-containing protein 5 [Sus scrofa].	110	3e-24

Oligo-microarray probe:      TOP

Probe ID	Rel.	Probe sequence
AGPOA4-11006	4.1	TTCAGTTTGGTCAGCGGCCAAGGGCGGTAGCCGTGCACGTTTATTCCTCCGCGGAAATAA

Assembly member:      TOP

Release	Contig/Singlet	Clones	Direction
20030531	20030531C-001071	2	fwd
20030826	20030826C-004651	2	fwd
20040204	20040204C-005337	2	fwd
20050322	20050322C-002086	2	fwd
20060611	20060611C-007581	2	fwd
20070806	20070806C-002574	2	fwd
20080515	20080515C-005168	2	fwd
20101001	20101001C-007921	10	fwd
20110601	20110601C-013843	10	fwd