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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
SPL01_0057_B02
Library: SPL01 (Spleen)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,410)
[FASTA format sequence]
CATGCGCCAC AAAAGGTTCC GATCCGGAAA CTACCCATCC TCGTTAAGCA ACGAGACAGA
CCGCCTGGTA CACTGGTGCC ACGGGGCGCC CGGCGTCATC CACACGCTCA TGCAGGCGTA
CAAGGTGTTT AAGGAGGAGA AGTACCTGAG GGACGCCGTG GAGTGCAGCG ACGTGATTTG
GCAGCGGGGC CTGCTGCGCA AGGGCTACGG CATCTGCCAC GGGACTGCGG GCAACGGCTA
CTCCTTCCTC TCCCTTTACC GCCTCACGCA GGACAAGAAG TACCTCTACC GAGCTTGCAA
GTTTGCAGAG TGGTGTCTGG AGTACGGAGC ACATGGTTGC CGCATTCCCG ACAGGCCCTA
CTCTCTCTTC GAAGGCATGG CCGGCGCCAT TCACTTCCTC TCCGACATCC TGGCCCCCGA
GACAGCACGG TTTCCAGCAT TTGAACTCGG CTCTTCAGAG AGGGATCCAA AGGTGCAAAA
AGACTCCTAA GGGACCCGAC GGGACCACAG GCCGCCAGGT TGCCTGGCGC CTGACACAGA
AGCCACCGTG CATCCTGAGG AAGGGAGGAC GGAGGGAGCA GAGCCCCGCA GACCCCCGCC
CCGCCAGCCT GCTGTGCTCC CCTCGCTGGT GTCAGCGTGA CGTCTCCGTG TCCAGTGCTG
CGTAATGTTT GCATGTCCCT CGGTGTTTGC TCTCCGTAGG CGTAGGTTGT TCTCAGCGGA
AGCCCTTCTC TGTCCATGAG CCCGAGCTGG CCGTGCATGA GGGCACACAG CAGCCCCTTC
TCCGTACCCA ATAAAGCGGG GTGCTTCTGT ATTGGCAGAC AGGACACAGG CAGGTGGTGT
CTCTCTTATG TACCAGAAAG ACTCTCTTTT AAGATGCCAT CCCAGTGTGA GACTTTTCCC
AGCATTTCCT GTGGGACCCT TTTGGGGGAG CTTGAGAGAA AGACTGCTCC AGAAATGAAA
AGAAATAGCG GAGGTAGAGG GGCTTTCGCT GGAGGGGGGC TGGGGAGCCT TGGCCCCAGT
TGGACCAGCC CCTCTGTGGG TCTTATGCTC ACCTTCGTGG TTTTAGGAAG CCCGAGGGGG
CGCGTGGCAG CTCTGCCGGG CTCCCACTCG CAGGCTCTTA GTGTGAAGTT CCAGACCCTT
GAAATCCAGG GCAGTCCGTG CCCTGGGGAG GGGACCGATG ACACCGGTGA CGGCGGTTCG
GGGGAAGCCT TGTCATGGCC ACATGCGAAC CAAGCAGTAG TGCCGTGTTT GTTACTAAAC
AGACTGCACC TCAGTTTTAT CAGCATCGTA ACGTCTTGTT CCAAGTTCAG CAGATACAGT
TCCGGATGGG CAGTAAGCAG AAAGACATTC AGCTGTTCCC ATGTCCCTCC AATTAAACTT
ATTTCAAAAA AAAAAAAAAA AAAAAAAAAA
Deduced amino acid sequence: (length: 162) [FASTA format sequence]
MRHKRFRSGN YPSSLSNETD RLVHWCHGAP GVIHTLMQAY KVFKEEKYLR DAVECSDVIW
QRGLLRKGYG ICHGTAGNGY SFLSLYRLTQ DKKYLYRACK FAEWCLEYGA HGCRIPDRPY
SLFEGMAGAI HFLSDILAPE TARFPAFELG SSERDPKVQK DS
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | LANCL2 | lanC-like protein 2 [Homo sapiens]. | 315 | 5e-86 | |
|
| LANCL1 | lanC-like protein 1 [Homo sapiens]. | 244 | 1e-64 | |
|
| LANCL3 | lanC-like protein 3 isoform 2 [Homo sapiens]. | 142 | 6e-34 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Lancl2 | lanC-like protein 2 [Mus musculus]. | 310 | 1e-84 | |
|
| Lancl1 | lanC-like protein 1 [Mus musculus]. | 238 | 9e-63 | |
|
| Lancl3 | lanC-like protein 3 [Mus musculus]. | 142 | 5e-34 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC483240 | PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin sensitivity protein) [Canis familiaris]. | 318 | 6e-87 | |
|
| LOC478897 | PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40) [Canis familiaris]. | 236 | 3e-62 | |
|
| LOC491823 | PREDICTED: similar to LanC lantibiotic synthetase component C-like 3 [Canis familiaris]. | 144 | 3e-34 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LANCL2 | lanC-like protein 2 [Bos taurus]. | 326 | 3e-89 | |
|
| LANCL1 | lanC-like protein 1 [Bos taurus]. | 245 | 8e-65 | |
|
| LANCL3 | lanC-like protein 3 [Bos taurus]. | 144 | 2e-34 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100620078 | PREDICTED: lanC-like protein 2-like, partial [Sus scrofa]. | 327 | 1e-89 | |
|
| LOC100153701 | PREDICTED: lanC-like protein 1 [Sus scrofa]. | 238 | 5e-63 | |
|
| LOC100626898 | PREDICTED: lanC-like protein 3-like [Sus scrofa]. | 144 | 2e-34 | |
|
| LOC100625232 | PREDICTED: lanC-like protein 1-like [Sus scrofa]. | 104 | 1e-22 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-17544 | 4.1 | ATGGGCAGTAAGCAGAAAGACATTCAGCTGTTCCCATGTCCCTCCAATTAAACTTATTTC |
Assembly member: TOP